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 | Acesso ao texto completo restrito à biblioteca da Embrapa Agricultura Digital. Para informações adicionais entre em contato com cnptia.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
25/04/2006 |
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Data da última atualização: |
17/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
SIMÕES, M.; BAHIA, D.; TORRES, K.; ZERLOTINI NETO, A.; ARTIGUENAVE, F.; FALCAO, P. R. K.; NESHICH, G.; OLIVEIRA, G. |
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Afiliação: |
MARIANA SIMÕES, Fiocruz; DIANA BAHIA, Fiocruz; KLEIDER TORRES, Fiocruz; ADHEMAR ZERLOTINI NETO, CNPTIA; FRANÇOIS ARTIGUENAVE, Fiocruz; PAULA REGINA KUSER FALCAO, CNPTIA; GORAN NESIC, CNPTIA; GUILHERME OLIVEIRA, Fiocruz. |
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Título: |
SNP identification in Schistosoma mansoni expressed genes. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. |
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Páginas: |
p. 131. |
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Idioma: |
Inglês |
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Notas: |
X-meeting 2005. Presented Posters. Na publicação: Paula Kuser. |
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Conteúdo: |
Schistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorphisms was conducted and SNPs in the cathepsin B gene, among others, were identified. The quality of the DNA sequences and individual SNPs were assessed by visual inspection with reference to chromatograms. Sixteen SNPs were identified, 44% were transitions and 56% transversions, 62% synonym mutations and 38% non-synonym mutations. The majority of the polymorphisms were in the third codon base. We are now pursuing the characterization of the possible effect of the polymorphisms in the structure of the cathepsin B protein. MenosSchistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorph... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática; Polimorfismo de nucleotídeo único. |
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Thesagro: |
Schistosoma mansoni. |
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Thesaurus Nal: |
Bioinformatics; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 02990nam a2200277 a 4500
001 1009287
005 2020-01-17
008 2005 bl uuuu u00u1 u #d
100 1 $aSIMÕES, M.
245 $aSNP identification in Schistosoma mansoni expressed genes.$h[electronic resource]
260 $aIn: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional$c2005
300 $ap. 131.
500 $aX-meeting 2005. Presented Posters. Na publicação: Paula Kuser.
520 $aSchistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorphisms was conducted and SNPs in the cathepsin B gene, among others, were identified. The quality of the DNA sequences and individual SNPs were assessed by visual inspection with reference to chromatograms. Sixteen SNPs were identified, 44% were transitions and 56% transversions, 62% synonym mutations and 38% non-synonym mutations. The majority of the polymorphisms were in the third codon base. We are now pursuing the characterization of the possible effect of the polymorphisms in the structure of the cathepsin B protein.
650 $aBioinformatics
650 $aSingle nucleotide polymorphism
650 $aSchistosoma mansoni
653 $aBioinformática
653 $aPolimorfismo de nucleotídeo único
700 1 $aBAHIA, D.
700 1 $aTORRES, K.
700 1 $aZERLOTINI NETO, A.
700 1 $aARTIGUENAVE, F.
700 1 $aFALCAO, P. R. K.
700 1 $aNESHICH, G.
700 1 $aOLIVEIRA, G.
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Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
16/11/2006 |
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Data da última atualização: |
16/11/2006 |
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Autoria: |
COELHO, Y. da S.; NASCIMENTO, H. G. do. |
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Título: |
Citricultura no Amazonas: problemas, potencial produtivo e qualidade dos frutos. |
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Ano de publicação: |
2004 |
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Fonte/Imprenta: |
Cruz das Almas: Embrapa Mandioca e Fruticultura, 2004. |
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Páginas: |
2 p. |
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Série: |
(Embrapa Mandioca e Fruticultura. Citros em Foco, 26). |
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Idioma: |
Português |
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Conteúdo: |
Frente ao desenvolvimento industrial proporcionado pela Zona Franca de Manaus e do rápido crescimento populacional verificado nos últimos anos, o Estado do Amazonas busca intensamente novas alternativas agrícolas, a fim de abastecer o crescente mercado local e reduzir os custos dos alimentos, impostos pelas longas distâncias desde os principais centros de produção até Manaus. Dentre as diversas alternativas potencialmente viáveis para o Amazonas está a citricultura, atividade favorecida pelos preços compensadores dos frutos cítricos e pelas condições de solo e clima. |
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Palavras-Chave: |
Amazonas; Citros. |
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Thesagro: |
Produtividade; Qualidade. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 01158nam a2200193 a 4500
001 1652986
005 2006-11-16
008 2004 bl uuuu u0uu1 u #d
100 1 $aCOELHO, Y. da S.
245 $aCitricultura no Amazonas$bproblemas, potencial produtivo e qualidade dos frutos.
260 $aCruz das Almas: Embrapa Mandioca e Fruticultura$c2004
300 $a2 p.
490 $a(Embrapa Mandioca e Fruticultura. Citros em Foco, 26).
520 $aFrente ao desenvolvimento industrial proporcionado pela Zona Franca de Manaus e do rápido crescimento populacional verificado nos últimos anos, o Estado do Amazonas busca intensamente novas alternativas agrícolas, a fim de abastecer o crescente mercado local e reduzir os custos dos alimentos, impostos pelas longas distâncias desde os principais centros de produção até Manaus. Dentre as diversas alternativas potencialmente viáveis para o Amazonas está a citricultura, atividade favorecida pelos preços compensadores dos frutos cítricos e pelas condições de solo e clima.
650 $aProdutividade
650 $aQualidade
653 $aAmazonas
653 $aCitros
700 1 $aNASCIMENTO, H. G. do
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Embrapa Mandioca e Fruticultura (CNPMF) |
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